- Adds autocorrelation attempt (using PR 223 to emcee)

- Adds return_type option to return (by default) a Bunch class such that
  the attributes can be accessed as `out.F0`, `out.F1` etc
- Improves documentation

- Cleans up convergence messages
- Adds autocorrelation calculation
- Provide acccess to `c` parameter
- Improve overall documentation of run()

- When Alpha and Delta are not given, use a simple sin
- Also fixes error in DeltsFSpin when Alpha and Delta are given
- Removes Alpha and Delta from MFDv4 call since they are not used

Since each SFT is generated in a for loop, the process can be quite
slow. This allows the user with `pathos` multiprocessing installed to
leverage `-N` cores (set by command line arg) to speed the process up
Setting N=1 or if pathos is not installed, reverts to the usual
behaviour.

- Adds amplitude prefact
- Adds F1
- Reorganise code to aid in future development

Previously, each individual SFT was written separately. This adds
functionality to concatenate all files used `lalapps_splitSFTs`.

Two new Writer classes to generate artifacts with either Frequency
Modulation alone, or Frequency and Amplitude modulation

Previously, the spin-modulation was neglected. This adds it back in and
doubles it to ensure the window covers all the frequencies

- Adds function to use XLALCWSignalCoveringBand
- Fixes issues in injection_helper_function, both are checked to agree

If detectors is not specified, det=None, then in the outfile simply use
'NA' to indicate this.

Note - the calculation of V is still incorrect, this just changes the
user interface

Renames sftfilepath -> sftfilepattern

See merge request !6

This renames the input sftfilepath to sftfilepattern and adds
documentation on how that should be used, i.e. a colon separated list of
wildstring or exact matches. In globbing for all matches, the colon
split is added in. sftfilepath is still used by `Writer` since
an exact path is known.

Gregory Ashton authored Jul 17, 2017 and Gregory Ashton committed Jul 17, 2017

Previously, each search class named its own output file. This provides a
function `set_out_file` in the top-level class which sets the `out_file`
attribute to be used.
- Adds class name to the out_file for clarity
- Add detectors used

Note - conflict resolved whilst cherry-picking

Fix sftfilenames and sftfilepath for multiple detectors

See merge request !5

Gregory Ashton authored Jul 17, 2017 and Gregory Ashton committed Jul 17, 2017

If there are multiple detectors, then multiple .sft files are generated.
This updates the attribute 'sftfilename' -> 'sftfilenames', a list of
those files while also updating 'sftpilpath' to a colon separated list
of the relevant sft files.

Previously, each search class named its own output file. This provides a
function `set_out_file` in the top-level class which sets the `out_file`
attribute to be used.
- Adds class name to the out_file for clarity
- Add detectors used

If there are multiple detectors, then multiple .sft files are generated.
This updates the attribute 'sftfilename' -> 'sftfilenames', a list of
those files while also updating 'sftpilpath' to a colon separated list
of the relevant sft files.

- In a prior commit, the number of sidebands checked for the normal search
(i.e. SSBprec=2) was erroneously set to M0, rather than 9. This fixes
that.
- Also improves logging output
- Splits of the UniformPriorToGrid run function to produce the data and
  plot separately

The command line argument is matched to formatting used by MFD to
reconstruct the argument (using .16g) formatting. Ideally, all REAL8
should use this formatting.

Removes the forced `int` for `fmin` in MFD. As noted by David, this
isn't required.

add SFT-vs-output timestamp check to gridsearch, and fix bug in _get_list_of_matching_sfts

See merge request !4

new helper function run_commandline()

See merge request !3

 -ported check from MCMC search
 -bug: for single-str SFT path, glob list comprehension
  was trying every single character