diff --git a/Doxyfile b/Doxyfile
index d363eaeb21b3eae46ff12280120ad8c23ecea4d8..8ec9984b58f94bd5e8767513ba7076eb9d1d8ba8 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -31,7 +31,7 @@ PROJECT_NAME = "Einstein@Home Graphics Application"
 # This could be handy for archiving the generated documentation or 
 # if some version control system is used.
 
-PROJECT_NUMBER = 0.2.0
+PROJECT_NUMBER = 
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) 
 # base path where the generated documentation will be put. 
@@ -505,7 +505,7 @@ RECURSIVE = YES
 # excluded from the INPUT source files. This way you can easily exclude a 
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 
-EXCLUDE = *.svn *CVS 
+EXCLUDE = *.svn *CVS
 
 # The EXCLUDE_SYMLINKS tag can be used select whether or not files or 
 # directories that are symbolic links (a Unix filesystem feature) are excluded 
@@ -684,7 +684,7 @@ HTML_FILE_EXTENSION = .html
 # each generated HTML page. If it is left blank doxygen will generate a 
 # standard header.
 
-HTML_HEADER = 
+HTML_HEADER = doc/default/header.html
 
 # The HTML_FOOTER tag can be used to specify a personal HTML footer for 
 # each generated HTML page. If it is left blank doxygen will generate a 
@@ -699,7 +699,7 @@ HTML_FOOTER = doc/default/footer.html
 # the style sheet file to the HTML output directory, so don't put your own 
 # stylesheet in the HTML output directory as well, or it will be erased!
 
-HTML_STYLESHEET = 
+HTML_STYLESHEET = doc/default/stylesheet.css
 
 # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, 
 # files or namespaces will be aligned in HTML using tables. If set to 
diff --git a/doc/default/footer.html b/doc/default/footer.html
index 570bf95f1bcf84b9c1afeebdce98a1214ac6bef2..1139b91c8ad5d5ccf59a443c2c82713bdb057aed 100644
--- a/doc/default/footer.html
+++ b/doc/default/footer.html
@@ -1,9 +1,9 @@
 <hr size="1">
 <table col="3" width="100%">
 	<tr>
-		<td width="300"><a href="http://www.aei.mpg.de"><img src="aei_full.png" alt="Albert-Einstein-Institute" align="left" border="0"></a></td>
-		<td width="*"><p align="center">Generated on $datetime</p></td>
-		<td width="300"><a href="http://www.doxygen.org/index.html"><img src="doxygen.png" alt="doxygen" align="right" border="0"></a></td>
+		<td width="250"><p align="left">Generated on $datetime</p></td>
+		<td width="*">&nbsp;</td>
+		<td width="250"><a href="http://www.doxygen.org/index.html"><img src="doxygen.png" alt="doxygen" align="right" border="0"></a></td>
 	<tr>
 </table>
 </body>
diff --git a/doc/default/header.html b/doc/default/header.html
index 7c427c0feb47318bc20dee748d0a1545f62dfe10..1369a9b8b59b3a961762dee92c25ad14c5005387 100644
--- a/doc/default/header.html
+++ b/doc/default/header.html
@@ -1,6 +1,15 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
-<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=utf-8">
 <title>$title</title>
-<link href="$relpath$doxygen.css" rel="stylesheet" type="text/css">
+<link href="$relpath$stylesheet.css" rel="stylesheet" type="text/css">
 <link href="$relpath$tabs.css" rel="stylesheet" type="text/css">
-</head><body>
+</head>
+<body>
+<table col="3" width="100%">
+	<tr>
+		<td width="300"><a href="http://www.ligo.org"><img src="lsc.gif" alt="LIGO Scientific Collaboration" align="left" border="0"></a></td>
+		<td width="*" valign="middle"><h1>Einstein@Home<br>(Graphics Application Framework)</h1></td>
+		<td width="300"><a href="http://www.aei.mpg.de"><img src="aei_full.png" alt="Albert-Einstein-Institute" align="right" border="0"></a></td>
+	<tr>
+</table>
+<br>
diff --git a/doc/default/lsc.gif b/doc/default/lsc.gif
new file mode 100644
index 0000000000000000000000000000000000000000..deeb89367e58afef20629ca9e06c7b1864e6b61c
Binary files /dev/null and b/doc/default/lsc.gif differ
diff --git a/doc/default/stylesheet.css b/doc/default/stylesheet.css
index c7db1a8a04edf1f89932d1059eb1d1873b8ee583..750e50cae60c149692206fb1058bea4b400cb5c0 100644
--- a/doc/default/stylesheet.css
+++ b/doc/default/stylesheet.css
@@ -2,19 +2,24 @@ BODY,H1,H2,H3,H4,H5,H6,P,CENTER,TD,TH,UL,DL,DIV {
 	font-family: Geneva, Arial, Helvetica, sans-serif;
 }
 BODY,TD {
-       font-size: 90%;
+	font-size: 90%;
 }
 H1 {
 	text-align: center;
        font-size: 160%;
 }
 H2 {
-       font-size: 120%;
+       font-size: 130%;
 }
 H3 {
+       font-size: 115%;
+}
+H4 {
        font-size: 100%;
 }
-CAPTION { font-weight: bold }
+CAPTION { 
+	font-weight: bold 
+}
 DIV.qindex {
 	width: 100%;
 	background-color: #e8eef2;
@@ -24,7 +29,7 @@ DIV.qindex {
 	padding: 2px;
 	line-height: 140%;
 }
-DIV.nav {
+DIV.navpath {
 	width: 100%;
 	background-color: #e8eef2;
 	border: 1px solid #84b0c7;
@@ -70,15 +75,43 @@ A.qindexHL:hover {
 	background-color: #6666cc;
 	color: #ffffff;
 }
-A.qindexHL:visited { text-decoration: none; background-color: #6666cc; color: #ffffff }
-A.el { text-decoration: none; font-weight: bold }
-A.elRef { font-weight: bold }
-A.code:link { text-decoration: none; font-weight: normal; color: #0000FF}
-A.code:visited { text-decoration: none; font-weight: normal; color: #0000FF}
-A.codeRef:link { font-weight: normal; color: #0000FF}
-A.codeRef:visited { font-weight: normal; color: #0000FF}
-A:hover { text-decoration: none; background-color: #f2f2ff }
-DL.el { margin-left: -1cm }
+A.qindexHL:visited { 
+	text-decoration: none; 
+	background-color: #6666cc; 
+	color: #ffffff 
+}
+A.el { 
+	text-decoration: none; 
+	font-weight: bold 
+}
+A.elRef { 
+	font-weight: bold 
+}
+A.code:link { 
+	text-decoration: none; 
+	font-weight: normal; 
+	color: #0000FF
+}
+A.code:visited { 
+	text-decoration: none; 
+	font-weight: normal; 
+	color: #0000FF
+}
+A.codeRef:link { 
+	font-weight: normal; 
+	color: #0000FF
+}
+A.codeRef:visited { 
+	font-weight: normal; 
+	color: #0000FF
+}
+A:hover { 
+	text-decoration: none; 	
+	background-color: #f2f2ff 
+}
+DL.el { 
+	margin-left: -1cm 
+}
 .fragment {
        font-family: monospace, fixed;
        font-size: 95%;
@@ -95,7 +128,13 @@ PRE.fragment {
 	padding-top: 4px;
 	padding-bottom: 4px;
 }
-DIV.ah { background-color: black; font-weight: bold; color: #ffffff; margin-bottom: 3px; margin-top: 3px }
+DIV.ah { 
+	background-color: black; 
+	font-weight: bold; 
+	color: #ffffff; 
+	margin-bottom: 3px; 
+	margin-top: 3px 
+}
 
 DIV.groupHeader {
        margin-left: 16px;
@@ -103,7 +142,11 @@ DIV.groupHeader {
        margin-bottom: 6px;
        font-weight: bold;
 }
-DIV.groupText { margin-left: 16px; font-style: italic; font-size: 90% }
+DIV.groupText { 
+	margin-left: 16px; 
+	font-style: italic; 
+	font-size: 90% 
+}
 BODY {
 	background: white;
 	color: black;
@@ -137,11 +180,16 @@ TD.indexvalue {
 	border: 1px solid #CCCCCC;
 }
 TR.memlist {
-   background-color: #f0f0f0; 
+	background-color: #f0f0f0; 
+}
+P.formulaDsp { 
+	text-align: center; 
+}
+IMG.formulaDsp {
+}
+IMG.formulaInl { 
+	vertical-align: middle; 
 }
-P.formulaDsp { text-align: center; }
-IMG.formulaDsp { }
-IMG.formulaInl { vertical-align: middle; }
 SPAN.keyword       { color: #008000 }
 SPAN.keywordtype   { color: #604020 }
 SPAN.keywordflow   { color: #e08000 }
@@ -149,8 +197,13 @@ SPAN.comment       { color: #800000 }
 SPAN.preprocessor  { color: #806020 }
 SPAN.stringliteral { color: #002080 }
 SPAN.charliteral   { color: #008080 }
+SPAN.vhdldigit     { color: #ff00ff }
+SPAN.vhdlchar      { color: #000000 }
+SPAN.vhdlkeyword   { color: #700070 }
+SPAN.vhdllogic     { color: #ff0000 }
+
 .mdescLeft {
-       padding: 0px 8px 4px 8px;
+	padding: 0px 8px 4px 8px;
 	font-size: 80%;
 	font-style: italic;
 	background-color: #FAFAFA;
@@ -161,7 +214,7 @@ SPAN.charliteral   { color: #008080 }
 	margin: 0px;
 }
 .mdescRight {
-       padding: 0px 8px 4px 8px;
+        padding: 0px 8px 4px 8px;
 	font-size: 80%;
 	font-style: italic;
 	background-color: #FAFAFA;
@@ -258,23 +311,26 @@ SPAN.charliteral   { color: #008080 }
 	border-right-style: none;
 	border-bottom-style: none;
 	border-left-style: none;
-       color: #606060;
+	color: #606060;
 	background-color: #FAFAFA;
 	font-size: 80%;
 }
-.search     { color: #003399;
-              font-weight: bold;
+.search { 
+	color: #003399;
+	font-weight: bold;
 }
 FORM.search {
-              margin-bottom: 0px;
-              margin-top: 0px;
+	margin-bottom: 0px;
+	margin-top: 0px;
 }
-INPUT.search { font-size: 75%;
-               color: #000080;
-               font-weight: normal;
-               background-color: #e8eef2;
+INPUT.search { 
+	font-size: 75%;
+	color: #000080;
+	font-weight: normal;
+	background-color: #e8eef2;
 }
-TD.tiny      { font-size: 75%;
+TD.tiny { 
+	font-size: 75%;
 }
 a {
 	color: #1A41A8;
@@ -282,66 +338,70 @@ a {
 a:visited {
 	color: #2A3798;
 }
-.dirtab { padding: 4px;
-          border-collapse: collapse;
-          border: 1px solid #84b0c7;
+.dirtab { 
+	padding: 4px;
+	border-collapse: collapse;
+	border: 1px solid #84b0c7;
 }
-TH.dirtab { background: #e8eef2;
-            font-weight: bold;
+TH.dirtab { 
+	background: #e8eef2;
+	font-weight: bold;
 }
-HR { height: 1px;
-     border: none;
-     border-top: 1px solid black;
+HR { 
+	height: 1px;
+	border: none;
+	border-top: 1px solid black;
 }
 
 /* Style for detailed member documentation */
 .memtemplate {
-  font-size: 80%;
-  color: #606060;
-  font-weight: normal;
+	font-size: 80%;
+	color: #606060;
+	font-weight: normal;
+	margin-left: 3px;
 } 
 .memnav { 
-  background-color: #e8eef2;
-  border: 1px solid #84b0c7;
-  text-align: center;
-  margin: 2px;
-  margin-right: 15px;
-  padding: 2px;
+	background-color: #e8eef2;
+	border: 1px solid #84b0c7;
+	text-align: center;
+	margin: 2px;
+	margin-right: 15px;
+	padding: 2px;
 }
 .memitem {
-  padding: 4px;
-  background-color: #eef3f5;
-  border-width: 1px;
-  border-style: solid;
-  border-color: #dedeee;
-  -moz-border-radius: 8px 8px 8px 8px;
+	padding: 4px;
+	background-color: #eef3f5;
+	border-width: 1px;
+	border-style: solid;
+	border-color: #dedeee;
+	-moz-border-radius: 8px 8px 8px 8px;
 }
 .memname {
-  white-space: nowrap;
-  font-weight: bold;
+	white-space: nowrap;
+	font-weight: bold;
 }
 .memdoc{
-  padding-left: 10px;
+	padding-left: 10px;
 }
 .memproto {
-  background-color: #d5e1e8;
-  width: 100%;
-  border-width: 1px;
-  border-style: solid;
-  border-color: #84b0c7;
-  font-weight: bold;
-  -moz-border-radius: 8px 8px 8px 8px;
+	background-color: #d5e1e8;
+	width: 100%;
+	border-width: 1px;
+	border-style: solid;
+	border-color: #84b0c7;
+	font-weight: bold;
+	-moz-border-radius: 8px 8px 8px 8px;
 }
 .paramkey {
-  text-align: right;
+	text-align: right;
 }
 .paramtype {
-  white-space: nowrap;
+	white-space: nowrap;
 }
 .paramname {
-  color: #602020;
-  font-style: italic;
-  white-space: nowrap;
+	color: #602020;
+	font-style: italic;
+	white-space: nowrap;
 }
 /* End Styling for detailed member documentation */
 
@@ -350,9 +410,67 @@ HR { height: 1px;
 	font-family: sans-serif;
 	margin:0.5em;
 }
-.directory { font-size: 9pt; font-weight: bold; }
-.directory h3 { margin: 0px; margin-top: 1em; font-size: 11pt; }
-.directory > h3 { margin-top: 0; }
-.directory p { margin: 0px; white-space: nowrap; }
-.directory div { display: none; margin: 0px; }
-.directory img { vertical-align: -30%; }
+/* these are for tree view when used as main index */
+.directory { 
+	font-size: 9pt; 
+	font-weight: bold; 
+}
+.directory h3 { 
+	margin: 0px; 
+	margin-top: 1em; 
+	font-size: 11pt; 
+}
+
+/* The following two styles can be used to replace the root node title */
+/* with an image of your choice.  Simply uncomment the next two styles, */
+/* specify the name of your image and be sure to set 'height' to the */
+/* proper pixel height of your image. */
+
+/* .directory h3.swap { */
+/* 	height: 61px; */
+/* 	background-repeat: no-repeat; */
+/* 	background-image: url("yourimage.gif"); */
+/* } */
+/* .directory h3.swap span { */
+/* 	display: none; */
+/* } */
+
+.directory > h3 { 
+	margin-top: 0; 
+}
+.directory p { 
+	margin: 0px; 
+	white-space: nowrap; 
+}
+.directory div { 
+	display: none; 
+	margin: 0px; 
+}
+.directory img { 
+	vertical-align: -30%; 
+}
+/* these are for tree view when not used as main index */
+.directory-alt { 
+	font-size: 100%; 
+	font-weight: bold; 
+}
+.directory-alt h3 { 
+	margin: 0px; 
+	margin-top: 1em; 
+	font-size: 11pt; 
+}
+.directory-alt > h3 { 
+	margin-top: 0; 
+}
+.directory-alt p { 
+	margin: 0px; 
+	white-space: nowrap; 
+}
+.directory-alt div { 
+	display: none; 
+	margin: 0px; 
+}
+.directory-alt img { 
+	vertical-align: -30%; 
+}
+