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updating references which use maps that were affected by the commit which altered how the cuba relative errors were set and also by the build flags andamplitude scaling changes

updating references for files that were affected by the amplitude scaling change and the various build script flag optimisation changes

updating test references for some map change errors and geo files which were calculated with the old quantum code

updating references which were effected by the enabling of numerical frequency comparison couplings at a modulator 7065eb15e(src)

updating reference to take into account correct application of knm matrix at a fsig'd mirror 15f6d19132(src)

Updating reference files using new version of Finesse all frequency solver. Generated using 7cd2de53fb