diff --git a/README b/README index 19bfd32e0e62341a69c6d6c8966383d8ab96bde2..a4baa9f80e76e2e5924ce4e9c6ead5a9fee94f55 100644 --- a/README +++ b/README @@ -46,18 +46,18 @@ Compiling main feedforward program: but it runs with a sourced bashrc on pulsar. Submitting main feedforward Condor jobs: -0. Submit to the CIT cluster nodes with "condor_submit_dag EleutheriaDAG.dag" +0. Submit to the CIT cluster nodes with "condor_submit_dag -maxjobs 100 EleutheriaDAG.dag" 1. Watch progress and verify done with "condor_q pulsar" checks and reading the output logs. Filling in interstitial frames: 0. Create the frames in between science segments after the main feedforward jobs are completed. -1. Text edit "createInterstitialCondorSubmitFile.py" +1. Text edit "createInterstitialCondorDagFile.py" to ensure that analysisDate has the current "yyyy/mm/dd". -2. Run "./createInterstitialCondorSubmitFile.py" -3. Compile "mcc -mv interstitialFrame.m" -4. Submit "condor_submit InterstitialSub.sub" +2. Run "./createInterstitialCondorDagFile.py" +3. Compile "/ldcg/matlab_r2012a/bin/mcc -mv -R -nodisplay -R -nojvm -R -singleCompThread interstitialFrame.m" +4. Submit "condor_submit_dag -maxjobs 100 InterstitialDAG.dag" Post-processing basic plots: 0. Produce basic plots of range and verify log file output by starting diff --git a/createInterstitialDagSubmitFile.py b/createInterstitialDagSubmitFile.py index da2f3b760ace6dd0a8f8359737694f6ba040b3d0..985c75ebdbbde0ec44694fad9e8f2d95beeb01fc 100755 --- a/createInterstitialDagSubmitFile.py +++ b/createInterstitialDagSubmitFile.py @@ -54,6 +54,7 @@ h("output = /home/pulsar/feedforward/" + analysisDate + "/AMPS/interstitialLogs/ h("error = interstitialLogs/interstitial.err.$(tagstring)") h("log = interstitialLogs/interstitial.log.$(tagstring)") h("request_memory = 4 GB") +h("environment = HOME=/archive/home/pulsar;LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib") h("notification = never") h("") h("arguments = $(argList)") diff --git a/run_interstitialFrame-well.sh b/run_interstitialFrame-well.sh index 9ab863a5fdb66f72fe3b6d250ab822ee24f37a1e..8008083f37b32331bcef8c8f339012dbbd8f3284 100755 --- a/run_interstitialFrame-well.sh +++ b/run_interstitialFrame-well.sh @@ -23,7 +23,7 @@ echo "------------------------------------------" # LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; # LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; # XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; -LD_LIBRARY_PATH=/ldcg/matlab_r2010b/runtime/glnxa64:/ldcg/matlab_r2010b/bin/glnxa64:/ldcg/matlab_r2010b/extern/lib/glnxa64:/ligotools/lib ; +LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib ; export LD_LIBRARY_PATH; export XAPPLRESDIR; echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};