From 31cd75788fddf31e020decf13739a1bfc5a8e4ca Mon Sep 17 00:00:00 2001
From: Grant Meadors <gdmeadors@gmail.com>
Date: Wed, 22 May 2013 12:49:48 -0700
Subject: [PATCH] Fixed remaining issues with the interstitial frame DAG
concept
---
README | 10 +++++-----
createInterstitialDagSubmitFile.py | 1 +
run_interstitialFrame-well.sh | 2 +-
3 files changed, 7 insertions(+), 6 deletions(-)
diff --git a/README b/README
index 19bfd32..a4baa9f 100644
--- a/README
+++ b/README
@@ -46,18 +46,18 @@ Compiling main feedforward program:
but it runs with a sourced bashrc on pulsar.
Submitting main feedforward Condor jobs:
-0. Submit to the CIT cluster nodes with "condor_submit_dag EleutheriaDAG.dag"
+0. Submit to the CIT cluster nodes with "condor_submit_dag -maxjobs 100 EleutheriaDAG.dag"
1. Watch progress and verify done with "condor_q pulsar" checks and
reading the output logs.
Filling in interstitial frames:
0. Create the frames in between science segments after the main feedforward
jobs are completed.
-1. Text edit "createInterstitialCondorSubmitFile.py"
+1. Text edit "createInterstitialCondorDagFile.py"
to ensure that analysisDate has the current "yyyy/mm/dd".
-2. Run "./createInterstitialCondorSubmitFile.py"
-3. Compile "mcc -mv interstitialFrame.m"
-4. Submit "condor_submit InterstitialSub.sub"
+2. Run "./createInterstitialCondorDagFile.py"
+3. Compile "/ldcg/matlab_r2012a/bin/mcc -mv -R -nodisplay -R -nojvm -R -singleCompThread interstitialFrame.m"
+4. Submit "condor_submit_dag -maxjobs 100 InterstitialDAG.dag"
Post-processing basic plots:
0. Produce basic plots of range and verify log file output by starting
diff --git a/createInterstitialDagSubmitFile.py b/createInterstitialDagSubmitFile.py
index da2f3b7..985c75e 100755
--- a/createInterstitialDagSubmitFile.py
+++ b/createInterstitialDagSubmitFile.py
@@ -54,6 +54,7 @@ h("output = /home/pulsar/feedforward/" + analysisDate + "/AMPS/interstitialLogs/
h("error = interstitialLogs/interstitial.err.$(tagstring)")
h("log = interstitialLogs/interstitial.log.$(tagstring)")
h("request_memory = 4 GB")
+h("environment = HOME=/archive/home/pulsar;LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib")
h("notification = never")
h("")
h("arguments = $(argList)")
diff --git a/run_interstitialFrame-well.sh b/run_interstitialFrame-well.sh
index 9ab863a..8008083 100755
--- a/run_interstitialFrame-well.sh
+++ b/run_interstitialFrame-well.sh
@@ -23,7 +23,7 @@ echo "------------------------------------------"
# LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
# LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;
# XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-LD_LIBRARY_PATH=/ldcg/matlab_r2010b/runtime/glnxa64:/ldcg/matlab_r2010b/bin/glnxa64:/ldcg/matlab_r2010b/extern/lib/glnxa64:/ligotools/lib ;
+LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib ;
export LD_LIBRARY_PATH;
export XAPPLRESDIR;
echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
--
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