diff --git a/README b/README index 22836847b9ab0601f63f9a6cc7c1c6c1dce819d2..19bfd32e0e62341a69c6d6c8966383d8ab96bde2 100644 --- a/README +++ b/README @@ -39,7 +39,11 @@ Cache and submit file creation: Compiling main feedforward program: 0. Call "source bashrc" while logged in as user pulsar@ldas-grid.caltech.edu -1. Run the Matlab compiler: "mcc -mv eleutheria.m" +1a. Run the Matlab compiler: "mcc -mv eleutheria.m" +1b. For better memory performance, run the Matlab 2012a compiler with + "/ldcg/matlab_r2012a/bin/mcc -mv -R -nodisplay -R -nojvm -R -singleCompThread eleutheria.m" + and note it may only compile on gmeadors, depending on env, + but it runs with a sourced bashrc on pulsar. Submitting main feedforward Condor jobs: 0. Submit to the CIT cluster nodes with "condor_submit_dag EleutheriaDAG.dag" diff --git a/bashrc b/bashrc index 89d64aedc357bcfbb9d10d0295d81c0b91744016..b7ea935d5c1740273e4168b2d059b9d2ffb1b6a7 100644 --- a/bashrc +++ b/bashrc @@ -6,6 +6,7 @@ alias matlab7='/ldcg/matlab_r14_sp3/bin/matlab -nosplash -nodesktop' alias matlab2007a='/ldcg/matlab_r2007a/bin/matlab -nosplash -nodesktop' alias matlab2010b='/ldcg/matlab_r2010b/bin/matlab -nosplash -nodesktop' alias matlab2011a='/ldcg/matlab_r2011a/bin/matlab -nosplash -nodesktop' +alias matlab2012a='/ldcg/matlab_r2012a/bin/matlab -nosplash -nodesktop' alias ee='eog' alias gv='ggv' @@ -42,7 +43,7 @@ export _CONDOR_DAGMAN_LOG_ON_NFS_IS_ERROR=FALSE # source ${LSC_DATAGRID_SERVER_LOCATION}/setup.sh #fi -export MATLAB_ROOT=/ldcg/matlab_r2010b +export MATLAB_ROOT=/ldcg/matlab_r2012a #export ARCH=glnx86 export ARCH=glnxa64 # diff --git a/createEleutheriaDagSubmitFile.py b/createEleutheriaDagSubmitFile.py index 929710b3b08014b1c0fa477f27a071a832c1e95b..38236b9155cb976f0d8f0791ce40494d60219c8a 100755 --- a/createEleutheriaDagSubmitFile.py +++ b/createEleutheriaDagSubmitFile.py @@ -32,7 +32,7 @@ h("output = /home/pulsar/feedforward/" + analysisDate + "/AMPS/eleutheriaLogs/el h("error = eleutheriaLogs/eleutheria.err.$(tagstring)") h("log = eleutheriaLogs/eleutheria.dag.log") h("request_memory = 4 GB") -h("environment = HOME=/archive/home/pulsar;LD_LIBRARY_PATH=/ldcg/matlab_r2010b/runtime/glnxa64:/ldcg/matlab_r2010b/bin/glnxa64:/ldcg/matlab_r2010b/extern/lib/glnxa64:/ligotools/lib") +h("environment = HOME=/archive/home/pulsar;LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib") h("notification = never") h("") h("arguments = $(argList)") diff --git a/run_eleutheria-well.sh b/run_eleutheria-well.sh index 7b48ab5cf7ab2319f87c9b40b1d54a0435f29f62..7f3fbec2f2f4d56f09ffc53dd4f9102dd2a58cae 100755 --- a/run_eleutheria-well.sh +++ b/run_eleutheria-well.sh @@ -23,7 +23,7 @@ echo "------------------------------------------" # LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; # LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; # LD_LIBRARY_PATH=/ldcg/matlab_r2011a/runtime/glnxa64:/ldcg/matlab_r2011a/sys/os/glnxa64:/ldcg/matlab_r2011a/bin/glnxa64:/ldcg/matlab_r2011a/extern/lib/glnxa64:/ldcg/matlab_r2011a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/ldcg/matlab_r2011a/sys/java/jre/glnxa64/jre/lib/amd64/server:/ldcg/matlab_r2011a/sys/java/jre/glnxa64/jre/lib/amd64:/ldcg/matlab_r2011a/sys/opengl/lib/glnxa64:/opt/lscsoft/lalstochastic/lib64:/opt/lscsoft/lalpulsar/lib64:/opt/lscsoft/lalburst/lib64:/opt/lscsoft/lalinspiral/lib64:/opt/lscsoft/lalxml/lib64:/opt/lscsoft/lalmetaio/lib64:/opt/lscsoft/lalframe/lib64:/opt/lscsoft/lal/lib64:/opt/lscsoft/glue/lib64/python2.4/site-packages:/opt/lscsoft/libframe/lib64:/opt/lscsoft/libmetaio/lib64:/opt/lscsoft/ldas-tools/lib64:/opt/lscsoft/dol/lib64:/opt/lscsoft/root/lib:/opt/lscsoft/root/lib/5.26:/opt/vdt/globus/lib:/ligotools/lib ; -LD_LIBRARY_PATH=/ldcg/matlab_r2010b/runtime/glnxa64:/ldcg/matlab_r2010b/bin/glnxa64:/ldcg/matlab_r2010b/extern/lib/glnxa64:/ligotools/lib ; +LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib ; # XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; export LD_LIBRARY_PATH; export XAPPLRESDIR;