debugged and polished bootstrap.py provisioning

bootstrap.sh

 #!/usr/bin/env bash
 
 sudo apt-get -y update
-sudo apt-get -y install git htop emacs23 libfftw3-3 libfftw3-dev
-
+sudo apt-get -y install git htop emacs23
 sudo apt-get -y install python-dev
-
 sudo apt-get -y install python-numpy
 sudo apt-get -y install ipython
 
-# special for synthlisa:
-sudo apt-get install swig2.0
+# synthlisa dependencies
+sudo apt-get -y install libfftw3-3 libfftw3-dev
+sudo apt-get -y install swig2.0
 sudo ln /usr/bin/swig2.0 /usr/bin/swig
 
 sudo mkdir /home/vagrant/src
 sudo mkdir /home/vagrant/local
 
-# Append to .profile
+sudo apt-get -y install python-scipy
+sudo apt-get -y install python-matplotlib
+sudo apt-get -y install python-pip
+
+sudo pip install pyRXP
+sudo pip install pyephem
+
+# append to .profile
 (
 cat <<'EOF'
 export SOME_ENV='true'
@@ -38,58 +44,36 @@ sudo python setup.py install -v
 cd /home/vagrant/src/lisasolve/mc3
 sudo python setup.py install -v
 
-##### Todo not working automatically
-cd /home/vagrant/src/synthlisa
-sudo python setup.py install --prefix=/vagrant
-
 cd /home/vagrant/src/synthlisa
 sudo python setup.py install
 
-sudo apt-get -y install python-scipy
-sudo apt-get -y install python-matplotlib
-
-sudo apt-get -y install python-pip
-
-# have to explicitely call for https since they changed the server access at pip --- ToDo test if still needed at Ubuntu 14
-sudo pip install pyRXP -i https://pypi.python.org/simple/
-sudo pip install pyephem -i https://pypi.python.org/simple/
-
-# ???
 chown -R vagrant:vagrant /home/vagrant/*
 
-#use newer OS like Ubuntu 14.04.5 LTS
-#
-#all python sites need to be accessd with TLS1.2. which comes with openssl
-#otherwise you get the tls error while e.g using pip:
-#
-# http://pyfound.blogspot.com/2017/01/time-to-upgrade-your-python-tls-v12.html
-# test python tls version to mitigate the tlsv1 alert protocol error (not able to https access)
-# python -c "import json, urllib2; print json.load(urllib2.urlopen('https://www.howsmyssl.com/a/check'))['tls_version']"
-
-### Todo make it automatic:
+# Things to be done manually
+# ssh-keygen -o -t rsa -C "your.email@example.com" -b 4096
+# put the public key into your gitlab profile
+# git clone git@gitlab.aei.uni-hannover.de:swetashah/xtalklisapropagation.git
+# git config --global user.email "you@example.com"
+# git config --global user.name "Your Name"
 
-# ...
-# git clone https://gitlab.aei.uni-hannover.de/kwiesner/LISAGalacticBinaryDataAnalysis.git
-# passwort required!
+# devops notes ------------------------------------------------------------
 
-# manually change import pyRXP to pyRXPU (check error message --> 2 places to patch)  #### 
- 
-# The path to input data of your script can be changed to /vagrant/ provided that you have copied
-# the data to the vagrant root directory on the host machine scripts should work now
- 
-#### On eventual memory error:
-#
+# If fft memory error occures like
 # File "/usr/lib/python2.7/dist-packages/numpy/fft/fftpack.py", line 75, in _raw_fft
 # r = work_function(a, wsave)
 # MemoryError
-#
 # change "Vagrantfile" configuration to more memory e.g. 4096 
 # > vagrant reload
+
+# Use newer OSs like Ubuntu 14.04.5 LTS
+# Reason:
+# all python sites need to be accessd with TLS1.2. which comes with openssl
+# otherwise you get the tls error while e.g using pip:
 # http://pyfound.blogspot.com/2017/01/time-to-upgrade-your-python-tls-v12.html
 # test python tls version to mitigate the tlsv1 alert protocol error (not able to https access)
 # python -c "import json, urllib2; print json.load(urllib2.urlopen('https://www.howsmyssl.com/a/check'))['tls_version']"
-
-# need to run with the very latest python version 2.7.9
+ 
+# If the very latest python version 2.7.9 is needed
 #sudo apt-get -y install --reinstall build-essential
 #sudo apt-get install libreadline-gplv2-dev libncursesw5-dev libssl-dev libsqlite3-dev tk-dev libgdbm-dev libc6-dev libbz2-dev
 #wget https://www.python.org/ftp/python/2.7.9/Python-2.7.9.tgz
@@ -97,7 +81,4 @@ chown -R vagrant:vagrant /home/vagrant/*
 #cd Python-2.7.9
 #./configure
 #make
-#sudo make install
-# sudo shutdown now -r ????
+#sudo make install
\ No newline at end of file
-
-