diff --git a/code_new/Sumit/Run_Setup.ipynb b/code_new/Sumit/Run_Setup.ipynb
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+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "id": "complimentary-direction",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "b''"
+ ]
+ },
+ "execution_count": 4,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "\"\"\"\n",
+ "Created by Sumit Kumar on 2020-03-08 && modified by Xisco on 2021-04\n",
+ "Last modified:\n",
+ "\"\"\"\n",
+ "\n",
+ "import os, sys, numpy, glob, argparse\n",
+ "from datetime import date\n",
+ "import subprocess\n",
+ "from subprocess import call\n",
+ "import re\n",
+ "\n",
+ "today = date.today()\n",
+ "date = today.strftime(\"%Y%m%d\")\n",
+ "\n",
+ "runname='run_0_mock'\n",
+ "nmax = 0\n",
+ "config_file ='config_n0_to_1_mock.ini'\n",
+ "\n",
+ "######\n",
+ "times = '(0 0.2 0.4 0.8 1.2 2 2.5 5 7.5 10 12 15 18 20)'\n",
+ "accounting_group = 'cbc.test.pe_ringdown'\n",
+ "cpus=8\n",
+ "npoints = 2000\n",
+ "req_memory=\"16GB\"\n",
+ "not_user='frjifo@aei.mpg.de'\n",
+ "pythonfile='/work/francisco.jimenez/sio/git/rdstackingproject/code_new/RD_Fits.py'\n",
+ "pythonscript='/work/francisco.jimenez/venv/bin/python'\n",
+ "#######################################################\n",
+ "\n",
+ "pwd = os.getcwd()\n",
+ "run_dir = '%s/%s'%(pwd,runname)\n",
+ "logs_dir = '%s/logs'%run_dir\n",
+ "\n",
+ "os.system('mkdir -p %s'%logs_dir)\n",
+ "os.system('cp %s %s/'%(config_file,run_dir))\n",
+ "\n",
+ "###########################################################################\n",
+ "# Creating Condor submit file\n",
+ "###########################################################################\n",
+ "filename1 = '%s/%s'%(run_dir,'condor_submit')\n",
+ "text_file1 = open(filename1 + \".sub\", \"w\")\n",
+ "text_file1.write(\"universe = vanilla\\n\")\n",
+ "text_file1.write(\"getenv = true\\n\")\n",
+ "text_file1.write(\"# run script -- make sure that condor has execute permission for this file (chmod a+x script.py)\\n\")\n",
+ "text_file1.write(\"executable = \"'%s/%s'%(run_dir,runname+'.sh \\n'))\n",
+ "text_file1.write(\"# file to dump stdout (this directory should exist)\\n\")\n",
+ "text_file1.write(\"output = %s/%s-$(Process).out\\n\"%(logs_dir,runname))\n",
+ "text_file1.write(\"# file to dump stderr\\n\")\n",
+ "text_file1.write(\"error = %s/%s-$(Process).err\\n\"%(logs_dir,runname))\n",
+ "text_file1.write(\"# condor logs\\n\")\n",
+ "text_file1.write(\"log = %s/%s-$(Process).log\\n\"%(logs_dir,runname))\n",
+ "text_file1.write(\"initialdir = %s \\n\"%run_dir)\n",
+ "text_file1.write(\"notify_user =\"+not_user+' \\n')\n",
+ "text_file1.write(\"notification = Complete\\n\")\n",
+ "text_file1.write('''arguments = \"-processid $(Process)\" \\n''')\n",
+ "text_file1.write(\"request_memory = \"+str(req_memory)+\"\\n\")\n",
+ "text_file1.write(\"request_cpus = \"+str(cpus)+\"\\n\") \n",
+ "text_file1.write(\"on_exit_remove = (ExitBySignal == False) || ((ExitBySignal == True) && (ExitSignal != 11))\\n\")\n",
+ "text_file1.write(\"accounting_group = %s\\n\"%accounting_group)\n",
+ "text_file1.write(\"queue 1\\n\")\n",
+ "text_file1.write(\"\\n\")\n",
+ "text_file1.close()\n",
+ "\n",
+ "###########################################################\n",
+ "# Creating python executable file\n",
+ "############################################################\n",
+ "filename2 = run_dir+'/'+runname+'.sh'\n",
+ "text_file2 = open(filename2, \"w\") \n",
+ "text_file2.write(\"#! /bin/bash \\n\")\n",
+ "text_file2.write(\"\\n\")\n",
+ "text_file2.write(\"times=\"+times+\"\\n\")\n",
+ "text_file2.write(\"config_file=\"+config_file+\"\\n\")\n",
+ "text_file2.write(\"pythonfile=\"+pythonfile+\"\\n\")\n",
+ "text_file2.write(\"pythonscript=\"+pythonscript+\"\\n\")\n",
+ "text_file2.write(\"\\n\")\n",
+ "text_file2.write(\"for i in ${times[@]}; do\\n\")\n",
+ "text_file2.write(\" awk -v a=\\\"$i\\\" '/^tshift/ && $3 != \\\"supplied\\\" { $3=a } { print }' $config_file > tmp && mv tmp $config_file\\n\")\n",
+ "text_file2.write(\" $pythonscript $pythonfile -c $config_file \\n\")\n",
+ "text_file2.write(\"done\\n\")\n",
+ "text_file2.write(\"awk -v a=\\\"0\\\" '/^tshift/ && $3 != \\\"supplied\\\" { $3=a } { print }' $config_file > tmp && mv tmp $config_file \\n\")\n",
+ "text_file2.write(\"\\n\")\n",
+ "text_file2.close()\n",
+ "os.system('chmod u+x %s'%filename2)\n",
+ "\n",
+ "os.system('cp '+runname+'.sh %s/'%run_dir)\n",
+ "os.system('chmod u+x ./'+runname+'.sh')\n",
+ "os.system('cd '+run_dir)\n",
+ "\n",
+ "###########################################################\n",
+ "# Checking the configuration file and adding some important replacements\n",
+ "############################################################\n",
+ "\n",
+ "filename3 = '%s/%s'%(run_dir,config_file)\n",
+ "# change the number of cores\n",
+ "bashCommand = \"awk -v a=\"+str(cpus)+\" '/^nb_cores/ && $3 != \\\"supplied\\\" { $3=a } { print }' \"+str(config_file)+\" > tmp && mv tmp \"+str(config_file);\n",
+ "subprocess.call(bashCommand,shell=True)\n",
+ "\n",
+ "filename3 = '%s/%s'%(run_dir,config_file)\n",
+ "# change the number of nmax\n",
+ "bashCommand = \"awk -v a=\"+str(nmax)+\" '/^nmax/ && $3 != \\\"supplied\\\" { $3=a } { print }' \"+str(config_file)+\" > tmp && mv tmp \"+str(config_file);\n",
+ "subprocess.call(bashCommand,shell=True)\n",
+ "\n",
+ "filename3 = '%s/%s'%(run_dir,config_file)\n",
+ "# change the number of nmax\n",
+ "bashCommand = \"awk -v a=\"+str(npoints)+\" '/^npoints/ && $3 != \\\"supplied\\\" { $3=a } { print }' \"+str(config_file)+\" > tmp && mv tmp \"+str(config_file);\n",
+ "subprocess.call(bashCommand,shell=True)\n",
+ "\n",
+ "###########################################################\n",
+ "# Submit the job\n",
+ "############################################################\n",
+ "filename4 = '%s/%s'%(run_dir,'condor_submit.sub')\n",
+ "bashCommand = ['condor_submit', str(filename4)]\n",
+ "process = subprocess.Popen(bashCommand, stdout=subprocess.PIPE,stderr=subprocess.PIPE);\n",
+ "output,error = process.communicate()\n",
+ "error"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "collect-bearing",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.7"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}