re-adding autoCombFind script

autoCombFindLHO.sh

+#!/bin/bash
+#source /home/aneunzert/test/bin/activate
+
+TEMP_DIR=~/public_html/latest/
+CONSEC=4
+
+echo "Removing old file from temp directory..."
+
+rm $TEMP_DIR/*
+
+echo "Finding latest spectrum file and copying to temp directory..."
+RECENTSPECT=$(ls -tr ~/public_html/comb_plots/combCheck*_cumulsince_2016-09-18/* | grep dat_ | tail -n1)
+echo $RECENTSPECT
+echo $RECENTSPECT > $TEMP_DIR/foundcombs.txt
+cp $RECENTSPECT $TEMP_DIR
+RECENTSPECT=$(ls -t $TEMP_DIR/* | head -n1)
+
+echo "Running comb finding algorithm..."
+COMBSTATS=$(python findComb.py --threshold 0.5 --inputfile=$RECENTSPECT --knowncombfile="preER10combnotes.txt" --fmin 0 --fmax 100 --spacingmin 0.3 --spacingmax 20 --scalerange 30 --nmostcommoncombs 1000 --ntoppeaks 1000 --consecutive $CONSEC --checkrange 1 --printmaxstat True --printmax 10 | tail -n2)
+
+echo $COMBSTATS
+
+TAGCOMBS=$(echo "$COMBSTATS" | tail -n1)
+MAXSTAT=$(echo "$COMBSTATS" | head -n1)
+
+echo $TAGCOMBS >> $TEMP_DIR/foundcombs.txt
+echo $MAXSTAT >> $TEMP_DIR/foundcombs.txt
+
+MAXSTAT=${MAXSTAT%.*}
+if [ $MAXSTAT -gt 100 ]
+then
+	ALERTMSG="<span style='background-color:red!important;' id='alert'>High</span>"
+elif [ $MAXSTAT -gt 10 ]
+then
+	ALERTMSG="<span style='background-color:orange;!important;' id='alert'>Moderate</span>"
+else
+	ALERTMSG="<span style='background-color:limegreen;!important;' id='alert'>Low</span>"
+fi
+
+SUMMARY="<h2> Unidentified comb alerts </h2>
+<p>Probability of unidentified comb(s) in the latest cumulative spectrum: ${ALERTMSG}
+<br>Plot showing the top comb candidates (max 10): <span><a href='https://ldas-jobs.ligo-wa.caltech.edu/~aneunzert/latest/H1:LSC-DARM_OUT_DQ.html' target='_blank'>here</a></span>" 
+
+echo "$SUMMARY" > $TEMP_DIR/summary.txt
+
+echo "Plotting..."
+
+<<<<<<< HEAD:autoCombFindLHO.sh
+python chplot.py --truefcutoff=True --fmin 0 --fmax 200 --consecutive 3 --checkrange 1 --overwrite=True --scalerange=0 $TAGCOMBS --inputfolder $TEMP_DIR --knowncombfile="preER10combnotes.txt"
+=======
+python chplot.py --truefcutoff=True --fmin 0 --fmax 100 --consecutive $CONSEC --checkrange 1 --overwrite=True --scalerange=0 $TAGCOMBS --inputfolder $TEMP_DIR --knowncombfile="preER10combnotes.txt"
+>>>>>>> 659cbf2df0a80a2c8bf081d7c704ef964300b239:autoCombFind.sh
+
+HTMLFILE=$(ls $TEMP_DIR/*.html)
+
+echo "Plot successfully generated at $HTMLFILE"