Updated doxygen config to cover latest directory structure changes

Doxyfile

@@ -477,7 +477,7 @@ WARN_LOGFILE =
 # directories like "/usr/src/myproject". Separate the files or directories 
 # with spaces.
 
-INPUT = ./ 
+INPUT = src/framework src/orc src/starsphere 
 
 # This tag can be used to specify the character encoding of the source files that 
 # doxygen parses. Internally doxygen uses the UTF-8 encoding, which is also the default 
@@ -1291,4 +1291,4 @@ DOT_CLEANUP = YES
 # The SEARCHENGINE tag specifies whether or not a search engine should be 
 # used. If set to NO the values of all tags below this one will be ignored.
 
-SEARCHENGINE = NO
+SEARCHENGINE = YES