------------------------------------------------- README - Instructions to run the scripts on Atlas ------------------------------------------------- The scripts need to be compiled on a head node with Matlab license. Run the compiled executable file on execute nodes. 1. Files to compile ------------------- The following files need to be put in the same directory for compiling. Project scripts: - run_search.m (main script) - viterbi_colFLT.m - argmax.m - binaryfilter.m - readfstats.m Matlab functions: - bestblk.m - col2im.m - colfilt.m - fcnchk.m - im2col.m - mkconstarray.m 2. Instruction to compile ------------------------- NOTE: To run jobs with Condor, one can NOT use the default path (/tmp/) for Matlab's lock files and must specify the number of cores Matlab will use on the nodes as it will otherwise try to run on all available ones. The solution is described in wiki: https://wiki.atlas.aei.uni-hannover.de/foswiki/bin/view/ATLAS/MatlabUnderCondor EXAMPLE: Run the command in the directory where the .m scripts are: /opt/matlab/default/bin/mcc -mv -R singleCompThread -R nojvm -R nodesktop -R nosplash -o <executable file name> <main script>.m 3. Files to deploy ------------------ - <executable file> (from last step) - atlas-matlab-init - Condor submission file <name>.sub EXAMPLE: (Run manually) atlas-matlab-init <executable file name> <parameter1, parameter2, ...> EXAMPLE: (Run as Condor jobs) Refer to sample submission file viterbi_search.sub
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Ling Sun authored
Name | Last commit | Last update |
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functions | ||
job_scripts | ||
README.txt | ||
argmax.m | ||
binaryfilter.m | ||
readfstats.m | ||
run_search.m | ||
viterbi_colFLT.m |