Commit e7f3abe5 authored by Gregory Ashton's avatar Gregory Ashton
Browse files

Several combined improvements/fixes in the main pyftsat code

1) Fixes missing passing of binary argument ot the search tool
(previouslly, the binary parameters where not searched over!)
2) Adds min/maxfraction to cumulative plot and fixed start times
3) Adds binary parameters to cumulative plot call
parent be55d032
......@@ -411,11 +411,12 @@ class ComputeFstat(object):
def calculate_twoF_cumulative(self, F0, F1, F2, Alpha, Delta, asini=None,
period=None, ecc=None, tp=None, argp=None,
tstart=None, tend=None, Npoints=1000,
tstart=None, tend=None, npoints=1000,
minfraction=0.01, maxfraction=1):
""" Calculate the cumulative twoF along the obseration span """
duration = tend - tstart
taus = np.linspace(minfraction*duration, duration, Npoints)
tstart = tstart + minfraction*duration
taus = np.linspace(minfraction*duration, maxfraction*duration, npoints)
twoFs = []
if self.transient is False:
self.transient = True
......@@ -430,6 +431,7 @@ class ComputeFstat(object):
def plot_twoF_cumulative(self, label, outdir, ax=None, c='k', savefig=True,
title=None, **kwargs):
taus, twoFs = self.calculate_twoF_cumulative(**kwargs)
if ax is None:
fig, ax = plt.subplots()
......@@ -654,7 +656,8 @@ class MCMCSearch(BaseSearchClass):
earth_ephem=self.earth_ephem, sun_ephem=self.sun_ephem,
detector=self.detector, BSGL=self.BSGL, transient=False,
minStartTime=self.minStartTime, maxStartTime=self.maxStartTime,
def logp(self, theta_vals, theta_prior, theta_keys, search):
H = [self.generic_lnprior(**theta_prior[key])(p) for p, key in
......@@ -957,15 +960,25 @@ class MCMCSearch(BaseSearchClass):
self.outdir, self.label))
def plot_cumulative_max(self):
def plot_cumulative_max(self, **kwargs):
d, maxtwoF = self.get_max_twoF()
for key, val in self.theta_prior.iteritems():
if key not in d:
d[key] = val
self.label, self.outdir, F0=d['F0'], F1=d['F1'], F2=d['F2'],
Alpha=d['Alpha'], Delta=d['Delta'], tstart=self.tstart,
if hasattr(self, 'search') is False:
if self.binary is False:
self.label, self.outdir, F0=d['F0'], F1=d['F1'], F2=d['F2'],
Alpha=d['Alpha'], Delta=d['Delta'], tstart=self.tstart,
tend=self.tend, **kwargs)
self.label, self.outdir, F0=d['F0'], F1=d['F1'], F2=d['F2'],
Alpha=d['Alpha'], Delta=d['Delta'], asini=d['asini'],
period=d['period'], ecc=d['ecc'], argp=d['argp'], tp=d['argp'],
tstart=self.tstart, tend=self.tend, **kwargs)
def generic_lnprior(self, **kwargs):
""" Return a lambda function of the pdf
......@@ -1408,7 +1421,7 @@ class MCMCSearch(BaseSearchClass):
deltaTs = np.diff(tbounderies)
ntrials = [time_trials + delta_F0 * dT for dT in deltaTs]
p_val = self.p_val_twoFhat(max_twoF, ntrials)
print 'p-value = {}'.format(p_val)
print('p-value = {}'.format(p_val))
return p_val
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