- 12 Apr, 2017 1 commit
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Gregory Ashton authored
No longer saves the emcee sampler itself to the pickle. This was done in response to a bug encountered by David Keitel in which while dumping the pickle an error was raised. Fixes #1
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- 11 Apr, 2017 6 commits
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Gregory Ashton authored
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Gregory Ashton authored
Requirement is matplotlib>=1.4 in order to use the style package. Make the default context ggplot (available in 1.4) and add an error message to help the user when they have selected one which does not exist.
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Gregory Ashton authored
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Gregory Ashton authored
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Gregory Ashton authored
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Gregory Ashton authored
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- 10 Apr, 2017 2 commits
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Gregory Ashton authored
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Gregory Ashton authored
Adds proper unit support by default, and options ot customise through the dictionaries
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- 05 Apr, 2017 1 commit
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Gregory Ashton authored
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- 23 Mar, 2017 1 commit
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Gregory Ashton authored
- Adds latex prior table writer (not found to be useful) - Add special case of 0 to texify_float - Expose texify_float in core - Fix confusing argument order in GridSearch
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- 02 Mar, 2017 1 commit
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Gregory Ashton authored
- Fixes undefined theta_values -> theta (missed as Ng > 1 isn't tested) - Import from core rathern than explicitly - Various PEP8 fixes
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- 28 Feb, 2017 2 commits
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Gregory Ashton authored
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Gregory Ashton authored
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- 21 Feb, 2017 1 commit
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Gregory Ashton authored
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- 15 Feb, 2017 2 commits
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Gregory Ashton authored
- Fixes missing sqrt in the convergence test - fixes error in periord - prevents plotting between burn and prod - allow user to specify upper limit - refactor code
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Gregory Ashton authored
This was mistakenly added during a testing phase - removed since it is not used.
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- 14 Feb, 2017 2 commits
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Gregory Ashton authored
- restructures the method into several different functions. - implements stopping if convergence is met a prespecified number of times - adds documentation - will plot the convgerence on the RH axis of the walkers plots
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Gregory Ashton authored
Convergence testing based on the Rubin-Gelman statistic is implemented via `setup_convergence_test`. This does not truncate the search yet, but simply adds a trace to the walkers plots for testing
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- 13 Feb, 2017 1 commit
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Gregory Ashton authored
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- 08 Feb, 2017 1 commit
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Gregory Ashton authored
- Addresses incorrecelt named attributes and prevents error if sftfilepath is not specified
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- 03 Feb, 2017 1 commit
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Gregory Ashton authored
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- 02 Feb, 2017 1 commit
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Gregory Ashton authored
Also adds thetas_at_ref data to the Writer object
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- 31 Jan, 2017 1 commit
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Gregory Ashton authored
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- 18 Jan, 2017 2 commits
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Gregory Ashton authored
Transforms the single pyfstat.py into a python module splitting the relevant code into separate sub-files in pyfstat. This should result in improved readability.
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Gregory Ashton authored
1) Update README installation instructions 2) Put all set_up code into seperate named functions 3) Remove underhanded mpl backend setter
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- 22 Dec, 2016 1 commit
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Gregory Ashton authored
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- 20 Dec, 2016 1 commit
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Gregory Ashton authored
Use N=1000 for the recoveries and N=10000 for the test in noise
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- 13 Dec, 2016 4 commits
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Gregory Ashton authored
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Gregory Ashton authored
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Gregory Ashton authored
Issues: 1) If tstart and duration where not explicity searched over, a loop condition would quickly send the duration to infinity 2) Fixed half norm definition
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Gregory Ashton authored
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- 08 Dec, 2016 1 commit
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Gregory Ashton authored
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- 05 Dec, 2016 1 commit
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Gregory Ashton authored
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- 01 Dec, 2016 1 commit
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Gregory Ashton authored
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- 30 Nov, 2016 3 commits
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Gregory Ashton authored
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Gregory Ashton authored
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Gregory Ashton authored
Rather than starting with the fully-coherent Vsize, this now starts with the input Nseg0 (i.e. from the SC search). and works back to Nseg=1. The user is then left to check the V0 value and whether the search is appropriate or not. Applies the idea to the follow-up example.
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- 29 Nov, 2016 1 commit
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Gregory Ashton authored
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- 25 Nov, 2016 1 commit
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Gregory Ashton authored
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