Fixed remaining issues with the interstitial frame DAG concept

README

@@ -46,18 +46,18 @@ Compiling main feedforward program:
     but it runs with a sourced bashrc on pulsar.
 
 Submitting main feedforward Condor jobs:
-0. Submit to the CIT cluster nodes with "condor_submit_dag EleutheriaDAG.dag"
+0. Submit to the CIT cluster nodes with "condor_submit_dag -maxjobs 100 EleutheriaDAG.dag"
 1. Watch progress and verify done with "condor_q pulsar" checks and
     reading the output logs.
 
 Filling in interstitial frames:
 0. Create the frames in between science segments after the main feedforward
     jobs are completed.
-1.  Text edit "createInterstitialCondorSubmitFile.py"
+1.  Text edit "createInterstitialCondorDagFile.py"
     to ensure that analysisDate has the current "yyyy/mm/dd".
-2. Run "./createInterstitialCondorSubmitFile.py"
-3. Compile "mcc -mv interstitialFrame.m"
-4. Submit "condor_submit InterstitialSub.sub"
+2. Run "./createInterstitialCondorDagFile.py"
+3. Compile "/ldcg/matlab_r2012a/bin/mcc -mv -R -nodisplay -R -nojvm -R -singleCompThread interstitialFrame.m"
+4. Submit "condor_submit_dag -maxjobs 100 InterstitialDAG.dag"
 
 Post-processing basic plots:
 0. Produce basic plots of range and verify log file output by starting

createInterstitialDagSubmitFile.py

@@ -54,6 +54,7 @@ h("output = /home/pulsar/feedforward/" + analysisDate + "/AMPS/interstitialLogs/
 h("error = interstitialLogs/interstitial.err.$(tagstring)")
 h("log = interstitialLogs/interstitial.log.$(tagstring)")
 h("request_memory = 4 GB")
+h("environment = HOME=/archive/home/pulsar;LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib")
 h("notification = never")
 h("")
 h("arguments = $(argList)")

run_interstitialFrame-well.sh

@@ -23,7 +23,7 @@ echo "------------------------------------------"
 #	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
 #	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
 #  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-LD_LIBRARY_PATH=/ldcg/matlab_r2010b/runtime/glnxa64:/ldcg/matlab_r2010b/bin/glnxa64:/ldcg/matlab_r2010b/extern/lib/glnxa64:/ligotools/lib ;
+LD_LIBRARY_PATH=/ldcg/matlab_r2012a/runtime/glnxa64:/ldcg/matlab_r2012a/bin/glnxa64:/ldcg/matlab_r2012a/extern/lib/glnxa64:/ligotools/lib ;
   export LD_LIBRARY_PATH;
   export XAPPLRESDIR;
   echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};